Thursday, May 25, 2017

The Philosophy of Sex, Part II: From Bacteria to Complex Life Forms



The Philosophy of Sex, Part II: From Bacteria to Complex Life Forms
By Josh Glazer

                It has been argued in the past, most notably by Richard Dawkins, et. al., that the most basic unit of selection, at the evolutionary level, is the gene.  In it, we hit a kind of biological bedrock, in which it is difficult to move beyond.  We know that certain genes contain the instructions (in DNA format) for creating specific proteins, the basic building blocks of life.  But we don’t know how DNA ‘evolved’.  We know how the properties of certain proteins emerge; from their specific makeup of amino acids, and their 3-dimensional structure, for example.  We also know that there are long stretches of so-called ‘junk’ DNA that do not code for any effective proteins .  Some of this junk DNA is the debris from genes that were lost in the evolutionary past.  Yet some junk DNA holds vitally important switches which control key components of embryonic development, such as the timing and activation of certain body parts in their growth cycle.  There are still large gaps in our knowledge of how DNA came about, and the earliest life, but we are beginning to make inroads towards an understanding of how both simple, and complex, life forms can develop, and even evolve, from certain sequences of genes.

We do have rich archeological and  geological records, among others, and along with modern genomics, we are able to extrapolate a great deal of data about the different lineages of animals, and also their lateral transfers of genes, which can happen at the bacterial level, as will be discussed below.  What we want to explore, here, however, is more basic question: how did complex body plans form from simple multi-cellular organisms? 

                In order to begin our inquiry, it will be helpful to briefly review, at this point, the first 4 billion years or so of earth’s history, and how life behaved during that time.  The earth formed as a fiery pit of asteroid collisions and volcanic eruptions about 4.5 million years ago, about the same age as the solar system as a whole.  After a period of cooling and a cessation of tectonic fireworks, the first vestiges of microbial life have been established as about 3.5 million years old.  These consist in faint impressions of the first living cells on this planet.  (Prothero, 164)
               
                These first cells, however, were simple in nature, lacking nuclei, and other complex components of life as we know it now.  These simple cells, or bacteria, would be the only life forms on the planet for about 3 billion years, until the formation of the first complex cell with a nucleus – the eukaryotic cell (Latin for ‘having a nucleus.  Prokaryotes are cells without a nucleus).  What brought about this transformation?  It is generally agreed upon now, although it was quite controversial when first published, that the eukaryotic cell was the result of two or more bacterium combining to live in symbiosis with one another.  In this way, the waste products of one bacteria could be used as the fuel for another type of bacterium, and vice versa.  Although prokaryotes far outnumber complex organisms on this planet, all plants and animals are made up of eukaryotic cells.

                The question now becomes; how did life make the jump from eukaryotic cells to complex life, with body plans that continued to evolve?  We can begin our inquiry with the first possible ‘version’ of sex, known as ‘bacterial conjugation’.  This, simply put, is when two bacteria link up via a cytoplasmic tube, and freely exchange genes.  Exactly why they do this, we do not know.  Another form of bacterial genetic exchange is the existence of ‘plasmids’, which are basically just floating chunks of bacterial DNA, ready to be taken up by any bacteria in the immediate area.  These methods are still in use today, as, for example, bacteria pass genes for resistance to modern antibiotics between one another, leading to an arms race between the bacteria’s ability to evolve counter-measures, and our ability to devise efficient anti-microbial medicines.

                But even these forms of ‘bacterial sex’, or, more literally, the exchange of DNA between two bacteria, are not representative of sexual reproduction, as it is known in more complex life.  A bacteria divides by asexual reproduction, making an exact copy of itself.  Rare mutations may occur through radiation, copying errors, or UV light, but these mutations are not nearly enough to produce the millions of species that exist on the planet today.

                In order for more complex body plans to exist, sexual reproduction had to evolve.  This came about around the beginning of the Cambrian Explosion, as it is known, about 650 million years ago, when radiations of new body plans and forms began to proliferate.  Why did this new form of reproduction lead to such a vast new number of organisms?  As opposed to asexual reproduction, sexual reproduction is a complex procedure which thoroughly mixes the genes of the two parents.  To summarize:

“Meiosis is simply the procedure by the which the male selects the genes that will go into a sperm or the female selects the genes that will go into an egg… During meiosis something peculiar happens.  Each of the 23 pairs of chromosomes is laid alongside its opposite number.  Chunks of one set are swapped with chunks of the other in a procedure called ‘recombination’.  One whole set is then passed on to the offspring, to be married with a set from the other parents – a procedure known as ‘outcrossing’...

“Sex is recombination plus outcrossing; this mixing of genes is its principal feature.  The baby gets a thorough mixture of its four grandparents’ genes (through recombination) and its 2 parents genes (through outcrossing).”  (Ridley, 29-30)

                This blending of genes eventually leads to the creation of an embryo, which then develops into a more fully grown young, ready to be exposed to the world.  One question that may still be asked at this point is, how does all of this ‘genetic mixing’ lead to the incredible proliferation of life forms in the Cambrian period, and afterwards?

                The answer may lie in a relatively new biological field call ‘Evolutionary Developmental Theory’, or just ‘Evo / Devo’ for short.  This new field lies at the crossroads of embryology and evolutionary biology; hence the name.  (Carroll, 9)  Essentially, it compares an embryo’s development across several related species, and tries to figure out what controls the formation of the body, limbs, etc.  Being that 98% of our DNA is the same as chimpanzees, that 2% is rather important in the understanding of our human species.  Evo / Devo seeks to understand how embryos both develop and evolve by creating genetic maps, which indicate where certain body parts begin to emerge from the once single celled embryo.

                The first studies of Evo / Devo were done using simple laboratory animals like fruit flies, and provided almost miraculous results.  They revealed, after years of studies on the fruit fly’s third chromosome, that there sat 8 genes, in order, which formed the entire body of the fruit fly.  More so, all animals, from fruit flies to mice to humans, shared a similar set of these form making genes.  They controlled modular formation of the organism, such as you might see in a millipede; the same structure repeated a thousand times.  Or, a new appendage grown where there had been only a bud before.  Through careful manipulation, scientists were able to show that these genes existed across major species lines; growing weird mutants with legs in strange places, all to demonstrate the ubiquity of these genes.  These genes were somehow controlling the growth of the embryo, telling it what to do and when to do it, in order to create a specific organism.

                Since the form of these genes was similar across protein domains (existing spaces of possible DNA coded proteins), ‘The shared DNA sequence was dubbed the homebox and the corresponding domain it encoded, the homeodomain… Hox genes for short.’  (Carroll, 65)  The discovery of these Hox genes opened a whole new window into the way that body plans were organized through genetic mixing; simple switches could enable a particular body part to either multiply or appear at a different place.  Over evolutionary time, this was enough evidence to explain the immense diversity of organisms on this planet, and also their basic similarities at the same time, like DNA and other formations, such as Mitochondria and other organelles.  One incredible revelation is that all the instructions for most animals are contained in the DNA of similar animals; it is the genetic switches (or Hox genes) which controlled what life form would develop from the initial blastula. 


               
                (Above Picture, from Carroll, 62.  Illustrates Hox genes expressed in a fruit fly.)

And so, we can see that the genetic mixing of sexual reproduction greatly increases the chances of new adaptations, which, over evolutionary time, can create entirely different forms, based on an organism’s adaptation to its environment.  Additionally, when we use all of our most advanced scientific techniques to look backward in time towards our most universal common ancestor, it appears that many of the key elements of life already existed almost 1 billion years ago; it was merely a matter of arranging them in the correct format.

                Here, we will end Part II.  In Part III, we will finally see how sexual selection in human beings has helped shaped human nature, our species, our history, and even our different cultures.

Sources Cited:

Carroll, Sean B. Endless Forms Most Beautiful: The New Science of Evo Devo. Norton, New York (2005).

Jastrow, Robert & Rampino, Michael. Origins of Life in the Universe. Cambridge, London (2008).

Ridley, Matt. The Red Queen: Sex and the Evolution of Human Nature. Harper Perennial, London (2003).

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